2015

December 9 2015
Saeed:
http://www.cell.com/cell-systems/abstract/S2405-4712%2815%2900185-4

December 2 2015
Jonathan:
http://www.nature.com/nature/journal/v527/n7578/full/nature15518.html#auth-2

November 25 2015
Jérôme:
CRY Drives Cyclic CK2-Mediated BMAL1 Phosphorylation to Control the Mammalian Circadian Clock

November 18 2015
Onur:
Dynamics of CRISPR-Cas9 genome interrogation in living cells

November 4 2015
Eric:
Combinatorial gene regulation by modulation of relative pulse timing

October 28 2015
Damien:
Transcriptional refractoriness is dependent on core promoter architecture

October 21 2015
Kyle:
Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution
The pluripotent regulatory circuitry connecting promoters to their long-range interacting elements

October 14 2015
Jake:
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

October 7 2015
Ben
Signaling Pathways Differentially Affect RNA Polymerase II Initiation, Pausing, and Elongation Rate in Cells

September 30 2015
Cédric:
Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions
Population Variation and Genetic Control of Modual Chromatin Architecture in Humans

September 23 2015
Saeed:
http://www.nature.com/nature/journal/v523/n7561/abs/nature14449.html
http://www.sciencedirect.com/science/article/pii/S1550413115003976

September 16 2015
Jérôme:
PARP1- and CTCF-Mediated Interactions between Active and Repressed Chromatin at the Lamina Promote Oscillating Transcription

September 9 2015
Jingkui:
Decoupling circadian clock protein turnover from circadian period determination

September 2 2015
Jonathan S.
Single-cell ATAC-seq: strength in numbers

August 26 2015
Jérôme:
CRISPR Inversion of CTCF Sites Alters Genome Topology and Enhancer/Promoter Function

August 19 2015
Onur:
Spatially resolved, highly multiplexed RNA profiling in single cells

July 8 2015
Damien:
Orthogonal control of expression mean and variance by epigenetic features at different genomic loci

June 24 2015
Kyle:
Functional organization of the human 4D Nucleome

June 17 2015
Jake:
Discrete functions of rev-erba couple metabolism to clock

June 10 2015
Benjamin:
Dynamic regulation of eve stripe 2 expression reveals transcriptional bursts in living Drosophila embryos

June 3 2015
Rosie:
Assembly of a comprehensive regulatory network for the Mammalian circadian clock: a bioinformatics approach

May 27 2015
Cédric:
The Circadian Protein BMAL1 Regulates Translation in Response to S6K1-Mediated Phosphorylation

May 20 2015
Saeed:
Two independent transcription initiation codes overlap on vertebrate core promoters

May 13 2015
Jingkui:
DNA damage shifts circadian clock time via Hausp-dependent Cry1 stabilization

May 6 2015
Gianrocco:
Periodic mRNA synthesis and degradation co‐operate during cell cycle gene expression

April 29 2015
Damien:
Bursty gene expression in the intact Mammalian liver

April 21 2015
Jonathan:
Single Mammalian Cells Compensate for Differences in Cellular Volume and DNA Copy Number through Independent Global Transcriptional Mechanisms

April 15 2015
Cancelled

April 8 2015
Kyle:
Clustering of mammalian Hox genes with other H3K27me3 targets within an active nuclear domain

April 1 2015
Onur:
http://www.sciencemag.org/content/347/6228/1367.full.pdf

March 25 2015
Jonathan S.:
Differential effects of light and feeding on circadian organization of peripheral clocks in a forebrain Bmal1 mutant

March 18 2015
Jake:
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells

March 11 2015
Kyle and Jérôme:
Comparative Hi-C Reveals that CTCF Underlies Evolution of Chromosomal Domain Architecture
and
A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

March 4 2015
Saeed:
Integrative Analysis of Circadian Transcriptome and Metabolic Network Reveals the Role of De Novo Purine Synthesis in Circadian Control of Cell Cycle

February 25 2015
Rosie:
Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells

February 18 2015
Cédric:
Quantitative profiling of initiating ribosomes in vivo

February 11 2015
Damien:
Specificity in Circadian Clock Feedback from Targeted Reconstitution of the NuRD Corepressor

February 4 2015
Jérôme:
A Discrete Transition Zone Organizes the Topological and Regulatory Autonomy of the Adjacent Tfap2c and Bmp7 Genes

January 28 2015
J. Bieler:
Annotation of genomics data using bidirectional hidden Markov models unveils variations in Pol II transcription cycle

January 21 2015
Jingkui:
Molecular Architecture of Transcription Factor Hotspots in Early Adipogenesis
and
Transcription Factor Cooperativity in Early Adipogenic Hotspots and Super-Enhancers